WebNov 4, 2024 · Do you use the latest HiCExplorer release? If not, please install it via a conda environment: conda create --name hicexplorer hicexplorer=3.6 python=3.8 -c bioconda -c conda-forge and activate the environment: conda activate hicexplorer. Retry your command. You can exit a conda environment via conda deactivate. WebSep 17, 2024 · hicHyperOptDetectLoops #756. hicHyperOptDetectLoops. #756. Closed. mtegtmey opened this issue on Sep 17, 2024 · 6 comments.
hicFindRestSite ImportError: Bio.Alphabet has been removed ... - GitHub
WebTo run Hail interactively on our clusters: (base) UserID@bell-fe00:~ $ sinteractive -N1 -n12 -t4:00:00 -A myallocation salloc: Granted job allocation 12345869 salloc: Waiting for resource configuration salloc: Nodes bell-a008 are ready for job (base) UserID@bell-a008:~ $ module load biocontainers hail (base) UserID@bell-a008:~ $ python3 Python ... Webparser = argparse. ArgumentParser (. Computes PCA eigenvectors for a Hi-C matrix. help='File names for the result of the pca.'. 'should compute e.g. 1 2 5 will return the first, second and fifth eigenvector.'. help='Output format. Either bedgraph or bigwig'. "in Homer software. This flag is only affective ". paris subway system map
RCAC - Knowledge Base: Applications: hail
WebFeb 12, 2024 · I used command as following: run hicConvertFormat for each resolution you like to use:ˋhicConvertFormats -m your.hic —inputFormat hic —outputFormat cool -o your-cool-file-10kb.cool -r 10000ˋ. run hicInfo to see which correction factors are available: ˋhicInfo -m your-cool-file-10kb.coolˋ WebHiCExplorer uses the library hic2cool to convert .hic interaction matrix files to the cool format. Usually .hic files have the three correction factors KR, VC or VC_SQRT; however these cannot be applied natively by HiCExplorer tools because HiCExplorer expects the correction values to be stored in the column weight . WebMay 8, 2024 · Having Issues using HiCExplorer with .hic files generated from Juicer v2.0 · Issue #798 · deeptools/HiCExplorer · GitHub deeptools / HiCExplorer Public Notifications Fork 69 Star 181 Code Issues 81 Pull requests 2 Actions Projects Wiki Security Insights New issue Having Issues using HiCExplorer with .hic files generated from Juicer v2.0 … paris subway route planner